## ----style, echo=FALSE, results='asis'----------------------------------- BiocStyle::markdown() suppressPackageStartupMessages({ library(GenomicAlignments) library(BSgenome.Hsapiens.UCSC.hg19) library(TxDb.Hsapiens.UCSC.hg19.knownGene) }) ## ----packages------------------------------------------------------------ library(GenomicRanges) library(GenomicAlignments) sessionInfo() ## ----methods-class------------------------------------------------------- methods(class="GRanges") ## ----methods-generic----------------------------------------------------- methods(findOverlaps) ## ----help, eval=FALSE---------------------------------------------------- # ?"findOverlaps" ## generic # ?"findOverlaps," ## specific method ## ----getClass-GRanges---------------------------------------------------- getClass("GRanges")